1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aagctaagttgacttgtcatttcatgatcatctgatcatgccaacttgagatggtaacttaatgtatggtgctgattatattactccacttggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTGTGGGGCTATATATCTT
species | Glycine max |
transcript | GLYMA14G06780.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCEST: gi|21285329|gb|BQ473200.1|BQ473200
genomic: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggtttt ... tggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
EST: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCTCTCATCCAGTTCEST: gi|51335938|gb|CO979804.1|CO979804
genomic: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggtttt ... tggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
EST: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCEST: gi|16277667|gb|BI942500.1|BI942500
genomic: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggtttt ... tggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
EST: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCEST: gi|16276249|gb|BI941758.1|BI941758
genomic: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggtttt ... tggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
EST: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAG ATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
genomic: AACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGgtatggtttt ... tggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTC
ttgagatggtaacttaatgtatggtgctgattatattactccacttggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTGTGGGGCTATATATCTT
ctccactt CT-rich tract
tgattatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagctaagttgacttgtcatttcatgatcatctgatcatgccaacttgagatggtaacttaatgtatggtgctgattatattactccacttggttaacagATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTGTGGGGCTATATATCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - -tgacttg
- - - - - - - - - - - catgatc
- - - - - - - - - - - - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - - - -gatggta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat