1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttttttctatatcaagtagtgaataatttcagggtttggttgcctttcacgaggctaattatcatctttctaacatccatgcttcctctcttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCGATAGTGGAAGCTCTCTGGTGCCTGGTTTCTTGCCTGCAGCACCTCCTTC
species | Glycine max |
transcript | GLYMA14G05570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAG GTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCGEST: gi|9902771|gb|BE611739.1|BE611739
genomic: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAGgtatgtttgt ... cttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCG
EST: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAG GTGTGTACCAGCAGCTGCAGGAGTTTGAGGAGA-GATTTATGGACGGATCGEST: gi|14516480|gb|BI095152.1|BI095152
genomic: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAGgtatgtttgt ... cttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCG
EST: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAG GTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCG
genomic: CAGTTATCAGTGGGTAAAGGAACGGAGACCTTCTGTTGAATTAACTCAAGgtatgtttgt ... cttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCG
tttcacgaggctaattatcatctttctaacatccatgcttcctctcttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCGATAGTGGAAGCTCTCTGGTGCCTGGTTTCTTGCCTGCAGCACCTCCTTC
tccatgcttcctctct CT-rich tract
taattatcatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttctatatcaagtagtgaataatttcagggtttggttgcctttcacgaggctaattatcatctttctaacatccatgcttcctctcttaatatagGTGTGTACCAGCAGCTGCAGGAGTTTGAGGAAAAGATCTATGGACGGATCGATAGTGGAAGCTCTCTGGTGCCTGGTTTCTTGCCTGCAGCACCTCCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - -gttgcct