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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagattttttcttcagccttggagtgaagcctttagctattgtggccttcttaacatttgacacccttttgtattttgagtttctataggatatgtcagattatgatgatgttagATACTGCTGTTCGGGTGCGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTACAGCGATCAAAGTGATTGATACTGCCTTAAGAG

Basic information

species Glycine max
transcript GLYMA14G03200.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G41880.1 (Arabidopsis thaliana), 3'ss of exon 5
-------gtaagattttttcttcagccttggagtgaagcctttagctattgtggccttcttaacatttgacaccct-tttgtattttgagtttctataggatatgtcagattatgatgatgttagATACTGCTGTTCGGGTGCGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTACAGCGATCAAAGTGATTGATACTGCCTTAAGAG
        ||| || || |    |   | | |     |  |||   | || | |   |       ||||   |     ||| || |   |||||   |||||||  ||||||||||||||||||||||||| |||||||| |  | |||||||| |     |||||||| || |||||    || |||||||| |||||||            
gtgagttttaatatcttattaagaatttcgtataattggttttg--tgtttttgttcttacgtagtttgttgcttgacttgaatatattgtttcctcagGATATAACAGATTATGATGATGTTAGATACTGTTGTTCGGGAG--CCGATGTTTGCTCCAAATGCTGGCCTTTAATGACAGTTGCTATCAAAGTCATTGATA------------

upper sequence: GLYMA14G03200.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g01350.t01 (Vitis vinifera), 3'ss of exon 4
--------gtaagattttttcttcagccttggagtgaagcct--ttagctattgtggccttcttaacatttgacacccttttgtattttgagtttctataggatatgtcagattatgatgatgttagATACTGCTGTTCGGGTGCGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTACAGCGATCAAAGTGATTGATACTGCCTTAAGAG
           | ||| |      ||      | || |   |  |||  | |   | | |  |    |||||      |||||  |||| | |||||  |||||||  |||||||||||||||||||||| ||||| || ||||  |||||||||| ||||  ||||||||  | |||||   ||| || |||||||||||||            
gtaagcaaaccatattctgagcagagtgaacaattgcactttacttaagtttaacgacttattggctatttggtgtg-ttttgacttttaattttctgcagGATATAACAGATTATGATGATGTTAGATATTGCTGCTCCGGTG--CTGATGTTTGCTTGGACTGCTGGCCTCTAATGACAGTAGCTATTAAAGTGATTGATA------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acacccttttgtattttgagtttctataggatatgtcagattatgatgatgttagATACTGCTGTTCGGGTGCGCTGATGTTTGTTTGGTTTGCTGGCCGTTGATGACTACAGCGATCAAAGTGATTGATACTGCCTTAAGAG
 atttgac  putative branch site (score: 4)
      ttttgtatttt  TA-rich tract