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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgcatactccttttgtttgttgtttgtttgaagtccatagtctacatttatttgctatactaaatggaactgtccaccacttattatgttatatgacgttactgattcagCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCA

Basic information

species Glycine max
transcript GLYMA13G19910.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G19910.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0040g03220.t01 (Vitis vinifera), 3'ss of exon 4
gcatgcatactccttttgtttgttgtttgtttgaagtccatagtctacatttatttgctatactaaatggaactgtccaccacttattatgttatatgacgttactgattcagCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCA
| |||||   |  | || | |||| |||||| ||     || ||  |  ||| | |  | || | || || |   | || ||||||||||  |||   | ||||||||||||||||||||||||||||||||| |  || ||||||  |||||   | |  ||||  ||||||  || |  |||||||| |  |  |||||| |||  |||||
gtatgcac-ttgttcttatgtgttttttgttagataattat-gtagat-tttgtgttatttattgaaagggaactttcagcacttattattgtatgcaatgttactgattcagCTGATATTGGATCAAAGGGGGTGGCAAAGATTAGTAACAGTGATGTTTGTGGCATTGGAAGGTCAAGCAGAACACTGCCAAGCTCTGAGTTACAGAAGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatactaaatggaactgtccaccacttattatgttatatgacgttactgattcagCTGATATTGGATCAAAGGGGATAACACAGATTACCAACAGCAGTCTCAGTGGTGTTGGAAATTCTACTAGAACACTACTGACTTCTGAGATACCAAAGCA
                       acttattatgttatat  TA-rich tract