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...tgctactttgttttattttgagtatcattcaatccatttatataggaacatacacaaaaaggggttgtttgttggatgttgaattttcaattttatacagGTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
species | Glycine max |
transcript | GLYMA13G18730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGEST: gi|213618122|gb|DB965279.1|DB965279
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttatacagGTTTACTTGTG
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATAEST: gi|209716489|gb|BW676939.1|BW676939
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttatacagGTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATAEST: gi|298184933|gb|HO030146.1|HO030146
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttatacagGTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAGAAATAGTTAGCAAG GTTTACTTGTGTGAAAAGCTGTCACTAEST: gi|298188285|gb|HO034978.1|HO034978
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttatacagGTTTACTTGTGTGAAAAGCTGTCACTA
EST: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAG GTTTACTTGTG
genomic: AGATACTAGTTACCAAACAGACTGGTCCTCAGGGAAAAATAGTTAGCAAGgtttgaaatt ... ttttatacagGTTTACTTGTG
gaacatacacaaaaaggggttgtttgttggatgttgaattttcaattttatacagGTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
atgttgaattttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctactttgttttattttgagtatcattcaatccatttatataggaacatacacaaaaaggggttgtttgttggatgttgaattttcaattttatacagGTTTACTTGTGTGAAAAGCTGTCACTAGTAAATGAGATGTACTTTGCTATAACACTGGATCGTACGAGTGCTGGTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
tgctact
- - - - - - - - - - - - - - -caatcca
- - - - - - - - - - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgttg