Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatcaataataaccctctagggaagataatgactacaagagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA

Basic information

species Glycine max
transcript GLYMA12G35050.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G35050.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G27440.1 (Arabidopsis thaliana), 3'ss of exon 3
gtaatatcaataataaccct-ctagggaagataatgactacaagagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA
|||||||  |  |||    |  |   | || |  | | |  | ||      | |||||     | | || |       |   ||| | ||| ||  |||| || |||||||||||| | || ||||| || ||||| |||||||||||||| || || ||||| ||||| |||||||| ||  | || || |||||  
gtaatatagaagatagtgttgtttttgtagcttgttaatcaaggaa---agacttttcttgc-tgtgtactcaagccatagagttttgtttgat-cagGTGGTGAGTGATCCAAGCTTGACGAAATCAGGGGTTTATTGGAGCTGGAACAATGCTTCGGCTTCTTTTGAGAACCAGTTATCAGAAGAAGCAAGTGACG

upper sequence: GLYMA12G35050.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g03160.t01 (Vitis vinifera), 3'ss of exon 4
gtaatatcaataataaccctctagggaagataatgactacaagagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA
|||| |  || |  |     |    |   |||||   | | || | | |  |       |||  |||  || |           || | | ||||||||||| ||||| |||||| | ||||| || ||||| |||||||||||||||||    |||||||| ||||| ||||||||||||||||| || |||||| 
gtaagagaaaaaggacttaccctttgttaataattgat-cgagggaagggggc------ataaatttgattgttg---------gtttatgatatagGTTGTCAGTGAGCCAAGCTTGACAAAGTCAGGTGTGTACTGGAGCTGGAACAAGAACTCAGCTTCATTTGAGAACCAGTTGTCTCAGGAAGCTAGTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469851|gb|CD411879.1|CD411879
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|7925093|gb|AW831119.1|AW831119
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|20498766|gb|BQ273696.1|BQ273696
EST:     AGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: AGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|13252142|gb|BG363045.1|BG363045
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|214009169|gb|DB988562.1|DB988562
EST:     GAAAGAGACTTGCTCAG                         GTTGTAAGTGCATTC-AGCCTAACAAGATGTGATGTTTACTGGAGCTGGAA
genomic: GAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTG-ATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAA
EST: gi|11688584|gb|BF596260.1|BF596260
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9564238|gb|BE473747.1|BE473747
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAN                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|151404633|gb|EV274447.1|EV274447
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|193714313|gb|FK655495.1|FK655495
EST:     AAGATGAAGCNGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: AAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|16276098|gb|BI941678.1|BI941678
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|214005688|gb|DB990377.1|DB990377
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|213619707|gb|DB967329.1|DB967329
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192333719|gb|FK025470.1|FK025470
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|4291246|gb|AI437592.1|AI437592
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAA
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAA
EST: gi|10848329|gb|BF070840.1|BF070840
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCANGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCT
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCT
EST: gi|20448782|gb|BQ252906.1|BQ252906
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|16343863|gb|BI969458.1|BI969458
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192328686|gb|FK023172.1|FK023172
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATTTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9821005|gb|BE556515.1|BE556515
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|209708170|gb|BW673833.1|BW673833
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|27425655|gb|CA937175.1|CA937175
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|7926210|gb|AW832236.1|AW832236
EST:     TAACCANAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9565140|gb|BE474640.1|BE474640
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAN                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192333021|gb|FK024670.1|FK024670
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|213588122|gb|DB982835.1|DB982835
EST:     CTCAGAAGATGAAGCAGGAAAAACAAATGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTTGAGCTGGAAC
genomic: CTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|17153503|gb|BM143436.1|BM143436
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9205245|gb|BE331469.1|BE331469
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAACAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192310579|gb|FG999238.1|FG999238
EST:     TAACCAAAGGCTATGTTTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATTTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|5666704|gb|AI930740.1|AI930740
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|207796650|gb|GD768376.1|GD768376
EST:     AAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: AAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|214007510|gb|DB987339.1|DB987339
EST:     TAACCAAAGGCTAAGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9821065|gb|BE556575.1|BE556575
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAT                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGTAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|16343906|gb|BI969501.1|BI969501
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192305060|gb|FG994610.1|FG994610
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|254332048|gb|GR846251.1|GR846251
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|193460081|gb|FK426612.1|FK426612
EST:     CAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: CAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|192329907|gb|FK021493.1|FK021493
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|6914773|gb|AW396303.1|AW396303
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|6914893|gb|AW396423.1|AW396423
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|5677318|gb|AI938448.1|AI938448
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|193332328|gb|FK298646.1|FK298646
EST:     AACCAAAGGTCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: AACCAAAGG-CTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|193700967|gb|FK637276.1|FK637276
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCC
EST: gi|20815134|gb|BQ299612.1|BQ299612
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9821037|gb|BE556547.1|BE556547
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|209710112|gb|BW658888.1|BW658888
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|11687583|gb|BF595259.1|BF595259
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|7796531|gb|AW781928.1|AW781928
EST:     TAACCANAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|151406699|gb|EV276514.1|EV276514
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|27427425|gb|CA938945.1|CA938945
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|9205373|gb|BE331597.1|BE331597
EST:     TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAACAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: TAACCAAAGGCTATGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
EST: gi|193716811|gb|FK654649.1|FK654649
EST:     AAGATGAAGCAGGAAAGAGACTTGCTCAG                         GTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC
genomic: AAGATGAAGCAGGAAAGAGACTTGCTCAGgtaatatcaa ... ttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA
                                        ttgtctttt  CT-rich tract
       aagttttcaaatatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaatatcaataataaccctctagggaagataatgactacaagagtatgaagttttcaaatatctttatttctcatgtgtggttgtcttttatatagGTTGTAAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAGCATCAGCTTCGTTTGAAAACCAGTTGTCTCAGGAGGCCAGTGATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT