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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatatatatatagcaattagcaagtaaagcttttatttgatagcttataagctggtaaacctttggttcctgtgatgcttattgtcatgatgtttttttcataacagTTGTTTCCAAGTATTAACAAGGTGGTCTTCCTTGATGATGACATCGTGGTACAAACTGATCTTTCACCTTTGTGGGACATTGAAATGAATGGAAAAGTAA

Basic information

species Glycine max
transcript GLYMA12G34280.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34280.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 4
gtaatatatatatatagcaattagcaagtaaagcttttatttgatagcttataagctggtaaacctttggttcctgtgatgcttattgtcatgatgtttttttcataacagTTGTTTCCAAGTATTAACAAGGTGGTCTTCCTTGATGATGACATCGTGGTACAAACTGATCTTTCACCTTTGTGGGACATTGAAATGAATGGAAAAGTAA
                           ||||||   |||||  |||     | | |   |     | |  | | |     | ||  ||   |  | || |||      ||||||||||| ||| |||||||| | || ||||| || |||||||||||||| |||||||||||| ||||| ||||||||||||| ||| | || ||||| |
---------------------------gtaaaggagttatt-aatataaccttaacctatttctgtataatgcttacttggttt--tgaacttttattctttcgtctgcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTTCAAACTGATCTTACACCTCTGTGGGACATTGACATGGAAGGGAAAGTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaaacctttggttcctgtgatgcttattgtcatgatgtttttttcataacagTTGTTTCCAAGTATTAACAAGGTGGTCTTCCTTGATGATGACATCGTGGTACAAACTGATCTTTCACCTTTGTGGGACATTGAAATGAATGGAAAAGTAA
                                      tgtttttttc  CT-rich tract
                                     atgtttttttcataa  TA-rich tract