Sequence
atgc intronic sequence ATGC exonic sequencegtgagtgtaatattcatggtacatatcctgtctcaataaaaacaattttcctgagcctctttccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
Basic information
species | Glycine max |
transcript | GLYMA12G07340.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 4
------gtgagtgtaatattca-tggtacata----tcctgtctcaat-aaaaacaattttcctgagcctcttt-ccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
|||| || |||| || ||||| ||| ||| | | | |||| || | || | || || ||| || ||||| ||| ||||||||| |||| ||||||||||||||||| ||||||
gtaagtgtgaaatcaaatttcaatgttacatggtcttccggtcgctcttgagaacatcttaaataagggttgttgttttgtatgtataacagGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208094328|gb|GD891589.1|GD891589EST: ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG GCTCTTTATCGAGGCTCTGTTGATGACAAGCATTATGCAATTAAG
genomic: ATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTGgtgagtgtaa ... tgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcctgtctcaataaaaacaattttcctgagcctctttccttacatgcatgacagGCTCTTTATCGAAGCTCTGTTGATGACAAGCATTATGCAATTAAG
tccttac putative branch site (score: 2)
cctctttccttacat CT-rich tract
tcaataaaaacaattt TA-rich tract