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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtaacttctgaaatatccctcacacactgatgatatgttgacaccctaatgcacgtttggttctccctgggattttggtgatcttgcatctaacaaacacactacccctgcctgcaacttttagcctctgcaattcacttttcaaagttcatttatgattgtttgtttttgatgctgtgaagGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCATCACACAGAATGATACCCTAAAACAGAAAATGTCATCCCTT

Basic information

species Glycine max
transcript GLYMA12G05970.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05970.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 1
gttcgtaacttctgaaatatccctcacacactgatgatatgttgacaccctaatgcacgtttggttctccctgggattttggtgatcttgcatctaacaaacacactacccctgcctgcaacttttagcctctgcaattcacttttcaaagttcattta--tgattgtttgtttttgatgctgtgaagGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCATCACACAGAATGATACCCTAAAACAGAAAATGTCATCCCTT-----------------------
                                                                                    | |||| |      |     |  |||     | |||  || |||    || ||||    |    |  ||  |||   | ||   ||| ||||       |||||| || ||| |||| |||||||| | ||||||||||| ||| || |||||||| || ||| ||||||||||  |  |                        
-----------------------------------------------------------------------------------aaccttgga----gtagttgtatcaccttcatcggca-tttctaggtaatggaattttagtccagatatttttttggctaataagttgcttttctcatcttgaagGTCACTACATGAGTGCATCAGCGCAAATGTGGGCCAGCACTCACAATGATACTCTCAAAGAGAAAATGTCTGCAGTGGTTTCTGCTCTTGCAACCTGTCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgcaattcacttttcaaagttcatttatgattgtttgtttttgatgctgtgaagGGCATTACTTGAGCGCATCAGCTCTAATGTGGGCCATCACACAGAATGATACCCTAAAACAGAAAATGTCATCCCTT
                                       ttttgat  putative branch site (score: 4)
                       atttatgattgttt  TA-rich tract