1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttggtttgtactagatgtgtatctaacatatgagatgtagtattataaaaaaattaacccctcaattttatatatgctttaacttgtcgttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACATATTTGGAGCTTGCTGTGCCACCACAGTGTTCATCCCATCATTCCACAAC
species | Glycine max |
transcript | GLYMA11G35080.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCACTTTTCTCCTCTGTGGATCTGTCATCCAGCTCATAGCTTGTGCAAG TTATATATACTACATACATGACCACTTGCACAAGAGGACTTGGACCTACATEST: gi|151394045|gb|EV263916.1|EV263916
genomic: TGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAGgtctcaattt ... ttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACAT
EST: TGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAG TAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACATEST: gi|6666460|gb|AW277978.1|AW277978
genomic: TGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAGgtctcaattt ... ttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACAT
EST: TGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAG TAATATATACTACATAAATGACCACTTGGACAAGAAGACTTGGACCTACAT
genomic: TGCACTTTTCTCCTCTTTGGATCTGTCATCCAGCTCATAGCTTGTGCAAGgtctcaattt ... ttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACAT
ataaaaaaattaacccctcaattttatatatgctttaacttgtcgttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACATATTTGGAGCTTGCTGTGCCACCACAGTGTTCATCCCATCATTCCACAAC
aattttatatatgctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttggtttgtactagatgtgtatctaacatatgagatgtagtattataaaaaaattaacccctcaattttatatatgctttaacttgtcgttatatacagTAATATATACTACATAAATGACCACTTGGACAAGAGGACTTGGACCTACATATTTGGAGCTTGCTGTGCCACCACAGTGTTCATCCCATCATTCCACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- tggtttg
- - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatatgc