1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgcatgtgctgctctgtttgtgtaattatttgtttatattactataacccttcaggttatccgggacaataaatgagtttttttgcctccttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCC
species | Glycine max |
transcript | GLYMA11G20020.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|17153148|gb|BM143081.1|BM143081
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|254345794|gb|GR859441.1|GR859441
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|254317801|gb|GR826785.1|GR826785
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: GTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|151406633|gb|EV276448.1|EV276448
genomic: GTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|6134407|gb|AW132800.1|AW132800
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|13479882|gb|BG509225.1|BG509225
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: AAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|192306688|gb|FG998086.1|FG998086
genomic: AAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: CGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|254318430|gb|GR832598.1|GR832598
genomic: CGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTATGTGGTTGACCGTTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCA-CCTGAAATACTAEST: gi|37994920|gb|CF806509.1|CF806509
genomic: TTATGTGGTTGACCG-TATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|21994574|gb|BQ786102.1|BQ786102
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAEST: gi|192312245|gb|FK003938.1|FK003938
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
EST: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAG GTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
genomic: TTTATGTGGTTGACCGTATCAAAGAACTGATCAAGTACAAAGGTTTCCAGgtatgtagtg ... ttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTA
aacccttcaggttatccgggacaataaatgagtttttttgcctccttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCC
ctataac putative branch site (score: 3)
tttttttgcctccttg putative PPT
aataaatgagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatgtgctgctctgtttgtgtaattatttgtttatattactataacccttcaggttatccgggacaataaatgagtttttttgcctccttgtaactagGTTGCACCAGCAGAACTTGAAGGGCTTCTCGTTTCTCACCCTGAAATACTAGAGGCTGTTGTTGTGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT