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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgctcaagtgtcttgtttgttatgatgttggtttttgttattttgccatgtcaaaaaactatctgtttttagtatggcaaaatactgaaacaagccatatttagatcaatttactgcttatatgctatcagaggaaactgatgtgcctgtttttaagtggttatatcagttaatattatatgttctttcagGAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTTTCTGTGTGGTCATGTAGAAAAGCCAGTAGCCGTTTGGGCCTTCAA

Basic information

species Glycine max
transcript GLYMA11G19900.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19900.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0061g00610.t01 (Vitis vinifera), 3'ss of exon 4
------gttgctcaagtgtcttgtttgttatgatgttggtttttgttattttgccatgtcaaaaaactatctgtttttagtatggcaaaatactgaaacaagccatatttagatcaatttactgcttatatgctatcagaggaaactgatgtgcctgtttttaagtggttatatcagttaatattatatgttctt--tcagGAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTTTCTGTGTGGTCATGTAGAAAAGCCAGTAGCCGTTTGGGCCTTCAA
       ||  |||  | | |  ||| || || |   || |  |||  |  |   ||||||       | ||  |||||   || || |  |||      |   | | |    | |||||| |  ||| |||  ||  ||  |    || |    | |  || | ||  | | | ||||| | || |||  ||||  ||||| ||   |||||||||||| ||| | || ||||||||||| || ||||| | |||| ||||||| |||||||||||  || | ||  | ||| |||| ||
gtttctatttttcacct-tatactttcttctgcttggggatagtgtggtcatagtatgtcacctgcgaaactcatttta---tgacatatcactt--gtcaattacactagctttaatttatt-tttaaatgtaatttgacaagttagaggcaa-tatacttgattgaatttct-agttacttttctattgtcttcttcagGTGAAGCTTTTCTTGAAGGATTAATCGTAAATGGTTGGCTCTCTAAATTGGTTTTTATGTGTGGCCATGTAGAAAAATCAATTGCAATGTGGACCTTTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889742|gb|BQ742955.1|BQ742955
EST:     CTTTTTGAACAACTGTCTAAATTCAGTGGTTGAATTGACTGCGGACAAAG                         GAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAT
genomic: CTTTTTGAACAACTGTCTAAATTCAGTGGTTGAATTGACTGCGGACAAAGgttgctcaag ... gttctttcagGAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgatgtgcctgtttttaagtggttatatcagttaatattatatgttctttcagGAGATATTTTTCTTGAAGGGTTACTAGTCAATGGTTGGCTTTCAAAATTAGCTTTTCTGTGTGGTCATGTAGAAAAGCCAGTAGCCGTTTGGGCCTTCAA
                                            tgttctttc  CT-rich tract
                        ttatatcagttaatat  TA-rich tract