Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactgttctgcacaattattaaaagtcaatttatgtccttgtatggattttttgtctaatgtttgcttgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG

Basic information

species Glycine max
transcript GLYMA11G19820.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398344|gb|EV268215.1|EV268215
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|193645936|gb|FK593893.1|FK593893
EST:     CGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCGAAAG
genomic: CGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTC-AAAG
EST: gi|6912942|gb|AW394530.1|AW394530
EST:     AGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: AGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298181314|gb|HO022753.1|HO022753
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAAT
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAAT
EST: gi|9902786|gb|BE611754.1|BE611754
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAATGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|58024346|gb|CX711087.1|CX711087
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|58017919|gb|CX704661.1|CX704661
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|7686157|gb|AW756805.1|AW756805
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|120494977|gb|EH223144.1|EH223144
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|31461410|gb|CD403438.1|CD403438
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|10847510|gb|BF071557.1|BF071557
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|192312931|gb|FK005487.1|FK005487
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298192960|gb|HO033394.1|HO033394
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|207699160|gb|GD679382.1|GD679382
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAA-CAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298169407|gb|HO020767.1|HO020767
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTATTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298174319|gb|HO017655.1|HO017655
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|7692630|gb|AW760732.1|AW760732
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|105634465|gb|DW247559.1|DW247559
EST:     ACAAATTTTTGGAAG                         TGTCACTGCTCAATATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: ACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|10232731|gb|BE801619.1|BE801619
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|192329306|gb|FK020225.1|FK020225
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|5508879|gb|AI855437.1|AI855437
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|13479522|gb|BG508865.1|BG508865
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAA
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAA
EST: gi|120529435|gb|EH257569.1|EH257569
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|151393442|gb|EV263317.1|EV263317
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|5760324|gb|AI965751.1|AI965751
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|192323328|gb|FK018979.1|FK018979
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|209725249|gb|BW672724.1|BW672724
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298175487|gb|HO018198.1|HO018198
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|23063923|gb|BU578697.1|BU578697
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAAACTTCAA-G
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAA-CTTCAAAG
EST: gi|120493743|gb|EH221910.1|EH221910
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACCAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|31458412|gb|CD400440.1|CD400440
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|58015022|gb|CX701764.1|CX701764
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298183049|gb|HO028312.1|HO028312
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATA
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATA
EST: gi|120493847|gb|EH222014.1|EH222014
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|120493827|gb|EH221994.1|EH221994
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|209725248|gb|BW672723.1|BW672723
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|298195310|gb|HO043838.1|HO043838
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTT
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTT
EST: gi|9899851|gb|BE608819.1|BE608819
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|10232284|gb|BE801172.1|BE801172
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
EST: gi|31312456|gb|CD397659.1|CD397659
EST:     GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACCAATTTTTGGAAG                         TGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
genomic: GCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAGgtaagactgt ... tgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagtcaatttatgtccttgtatggattttttgtctaatgtttgcttgctttttagTGTCACTGCTCAAGATCTTGTTGACATAATCAAGGCACAACTTCAAAG
                               gtctaat  putative branch site (score: 3)
                                       tttgcttgcttttt  CT-rich tract
                        attttttgtctaat  TA-rich tract