1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aaatcctggccagagcagctttattagatagcaatagcatattgcatatttcttggtttctcctgttgcagcggaccatgatttagtagtgtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCTTCATGCTTCCTTACCTCAATCAAGAAGACAATAAGTTGGCGGGACAGT
species | Glycine max |
transcript | GLYMA11G15000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAG AATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCEST: gi|151412707|gb|EV282519.1|EV282519
genomic: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGgtattagaca ... gtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTC
EST: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAG AATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCEST: gi|9205492|gb|BE331716.1|BE331716
genomic: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGgtattagaca ... gtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTC
EST: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAG AATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTC
genomic: ACTCTACTCAATCAAGAGCTGGAAAATCAAGGGATTAGTTTGCCAGAAAGgtattagaca ... gtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTC
atatttcttggtttctcctgttgcagcggaccatgatttagtagtgtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCTTCATGCTTCCTTACCTCAATCAAGAAGACAATAAGTTGGCGGGACAGT
atgattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcctggccagagcagctttattagatagcaatagcatattgcatatttcttggtttctcctgttgcagcggaccatgatttagtagtgtttatgcagAATCAATGATGATGAGCTCCACAGATTTTACACAGCTTCTAATAATGACTCTTCATGCTTCCTTACCTCAATCAAGAAGACAATAAGTTGGCGGGACAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - -ctggcca
- - - - - - - gcagctt
- - - - - - - - - - - - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgat