1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttttaactaaaacaagatatacctttaatgttgagtaatgtaggtataaataacacgtactgatgtttgttgttctaaatgttataattgaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAGTATTGGTATCGATCCTTATGAAGTGTTCCAAGATGCAGAATGGGCTTT
species | Glycine max |
transcript | GLYMA10G34150.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAEST: gi|151394825|gb|EV264696.1|EV264696
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAEST: gi|254344943|gb|GR851426.1|GR851426
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: GTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAACTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTCAEST: gi|5606819|gb|AI900917.1|AI900917
genomic: GTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAACTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTCAEST: gi|151403877|gb|EV273687.1|EV273687
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: TATTGCTCTCAAATTATTGGGATCAAAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAEST: gi|21888548|gb|BQ741761.1|BQ741761
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAEST: gi|213589352|gb|DB961685.1|DB961685
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
EST: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAG GTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
genomic: TATTGCTCTCAAATTATTGGGATCAGAAAGGTCAATCCAAGCTCTTGAAGgtaagcttcc ... gaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTA
tataaataacacgtactgatgtttgttgttctaaatgttataattgaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAGTATTGGTATCGATCCTTATGAAGTGTTCCAAGATGCAGAATGGGCTTT
ttctaaa putative branch site (score: 2)
ttctaaatgttataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttaactaaaacaagatatacctttaatgttgagtaatgtaggtataaataacacgtactgatgtttgttgttctaaatgttataattgaacatgcagGTGTTGCAATGGAATTGGAGGACTCTTTGTTTCCTTTGTTGAGGGAGGTTAGTATTGGTATCGATCCTTATGAAGTGTTCCAAGATGCAGAATGGGCTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG