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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatgcatgcttgtaaccagaaactcttattcatgtttcaaaaccatggcttaggaatcaattaatcaatcttgtaatgcgtactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCAT

Basic information

species Glycine max
transcript GLYMA10G33710.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G33710.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0013g00260.t01 (Vitis vinifera), 3'ss of exon 4
-gcatgcatgcttgtaacc--agaaactctt---attcatgtttcaaa-accatggcttaggaatcaattaatcaatcttgta---atgcgtactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCAT
    |  || | | || ||  || |  | ||   ||| ||| ||   | |  |  | |||       ||| ||  || ||||    || | || | |  |||| ||||||||   || |||||||||  |||||||||||||||| || ||| ||||||| || || ||||||||||| ||| ||||||| || || || |
ctattttatccctttagcctaagcagtttttgatatttatgcttggtacagtagtgattacccccatattcatagatgttgtctctatccata-tatatagGTTTGGAACCACACCTCCTTCTGGGAAAGCATGAAACCAGGTGGTGGAGGAGAGCCATCTGGTGATCTTCTAGAACTCATTAAAAGAGATTTCGGTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16278108|gb|BI942730.1|BI942730
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254331747|gb|GR843597.1|GR843597
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|298186181|gb|HO036814.1|HO036814
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254342598|gb|GR858760.1|GR858760
EST:     CATCATATATTAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|209701271|gb|BW652693.1|BW652693
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254348266|gb|GR851945.1|GR851945
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254325235|gb|GR838116.1|GR838116
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|8669466|gb|BE190573.1|BE190573
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254326189|gb|GR840781.1|GR840781
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|298195408|gb|HO039239.1|HO039239
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|16277720|gb|BI942528.1|BI942528
EST:     GACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: GACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254314591|gb|GR829584.1|GR829584
EST:     TGACATTCTCCCAGCTTTCAACAATGCCAGCACAG                         GTATGGAACCATGAC-TC-TCTGGGAGTGCATGAAACCAGGTGGAGGTGG
genomic: TGACATTCTTCCAGCTTTCAACAATG-CAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGG
EST: gi|17964788|gb|BM271517.1|BM271517
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254325969|gb|GR838850.1|GR838850
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254345133|gb|GR851509.1|GR851509
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254334880|gb|GR844665.1|GR844665
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254325236|gb|GR838117.1|GR838117
EST:     CAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAAGGTGG
genomic: CAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGG-AGGTGG
EST: gi|298178811|gb|HO024546.1|HO024546
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|151397135|gb|EV267008.1|EV267008
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCACGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|16277492|gb|BI942411.1|BI942411
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|16278151|gb|BI942752.1|BI942752
EST:     CAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|151400885|gb|EV270699.1|EV270699
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|16279073|gb|BI943244.1|BI943244
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254328055|gb|GR835020.1|GR835020
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|298169737|gb|HO021097.1|HO021097
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|23059483|gb|BU578378.1|BU578378
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254328056|gb|GR835021.1|GR835021
EST:     GGTGACA-TCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: GGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254335430|gb|GR846927.1|GR846927
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254335241|gb|GR846738.1|GR846738
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254338564|gb|GR845707.1|GR845707
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|117557903|gb|EG702288.1|EG702288
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|209700727|gb|BW673058.1|BW673058
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254318037|gb|GR832205.1|GR832205
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254332939|gb|GR850189.1|GR850189
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254344266|gb|GR851069.1|GR851069
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|5770701|gb|AI973875.1|AI973875
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|26046070|gb|CA783410.1|CA783410
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254342597|gb|GR858759.1|GR858759
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|209718848|gb|BW669035.1|BW669035
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254344267|gb|GR851070.1|GR851070
EST:     TCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCCAGGTGGAGGTGG
genomic: TCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAA-CCAGGTGGAGGTGG
EST: gi|213588652|gb|DB957674.1|DB957674
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254326190|gb|GR840782.1|GR840782
EST:     CCAGCTTTCAACAATGCAGCACAG                         GTAT-GAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254328791|gb|GR833163.1|GR833163
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254318038|gb|GR832206.1|GR832206
EST:     CTTTCAACAATGCAGCACAG                         A
genomic: CTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcag-
EST: gi|254318038|gb|GR832206.1|GR832206
EST:     CTTTCAACAATGCAGCACAG                         A
genomic: CTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcag-
EST: gi|15663838|gb|BI701209.1|BI701209
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254334881|gb|GR844666.1|GR844666
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254314590|gb|GR829583.1|GR829583
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|7684639|gb|AW755287.1|AW755287
EST:     CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: CATCATATAATAAGGGTGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
EST: gi|254328792|gb|GR833164.1|GR833164
EST:     TGACATTCTTCCAGCTTTCAACAATGCAGCACAG                         GTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA
genomic: TGACATTCTTCCAGCTTTCAACAATGCAGCACAGgcatgcatgc ... tactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaaccatggcttaggaatcaattaatcaatcttgtaatgcgtactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCAT
                       aattaat  putative branch site (score: 3)
                   aatcaattaatcaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatgcatgcttgtaaccagaaactcttattcatgtttcaaaaccatggcttaggaatcaattaatcaatcttgtaatgcgtactgtgcagGTATGGAACCATGACTTCTTCTGGGAGTGCATGAAACCAGGTGGAGGTGGAAAGCCATCCGGGGAGCTTCTAGAACTGATTGAAAGAGACTTTGGCTCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA