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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggctctactttcctttggctttttaaggctatgattatgcatgttaacttgtttttgtttgctagtttagtacatgcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG

Basic information

species Glycine max
transcript GLYMA10G07610.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G03730.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaaggctctactttcctttggctttttaaggctatgattatgcatgttaacttgtttttgtttgctagtttagtacatgcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG
                       | |  || |   || |  ||  |   ||    |   |   || ||||| | |   | |||    |   ||   || ||||| ||        || ||||   |   | |||||||| ||||||   ||||||||||| ||||||||||| || || ||||||||||| || || || |||||  | || || |||||  | |||||| |||
----------------------atgtgaaaagtggtgttattgattagaaaaaaataggttactgatagttgaatgt-tccaa----agaaaaaaagtattttatat-------cttctatttggtgcatgcagGTACTGGCTGACATAATTGATTTACCCTGTCGAATTGCCAAAGGATGTAAATATTGTAATAGAGACGATGCCGCTTCGTGCCTTGTCAGGTTTGGGCTTG

upper sequence: GLYMA10G07610.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggctctactttcctttggctttttaaggctatgattatgcatgttaacttgtttttgtttgctagtttagtacatgcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG
                                ||  | ||||| |  | |    || ||  ||| | ||||||  |  |     || || ||    ||  || | |     ||||| | |||| ||   | ||||| || |||||| | || ||||| | |||||| || || |||||||| |||||||| | ||| ||||||||||| || |||||||||||  |||||  ||
------------------------------ctctcagcttatgtacatgagagggtatt-attttccagtttaaaattttattctggatctataaggtgattcataga---tgcttgaaattctatccatgcagGTGCTGGCTGACACAATAGATTTGCGATGTCGGATAGCCAAGGGCTGCAAATATTGTACAAGAGATGATGCTTCCTCCTGTCTTGTTCGGGTTGGGCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaattgtatttaagttgttttttaaatgacttgctttatattcaatattttcagGTACTAGCTGACGCCATTGATTTACCATGTCGAATTGCTAAGGGCTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGATTG
                                              tattttc  CT-rich tract
                  ttttttaaatgacttg  TA-rich tract