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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatctcaaaacacgagcctttgttgttttttgcattagaataatttctcgaatttatgtagtttcattcaagagactgagctctcccaagagacatgcttatcagtcagccatactgtgctatgttggtacttggtattgttagtgtttaatatgattactgattctggtttctctgtttgcagTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTTTGGCAATTGGCACTGGTTACCCTTGCCGTGGTTC

Basic information

species Glycine max
transcript GLYMA10G06220.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G06220.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G36910.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgatctcaaaacacgagcctttgttgttttttgcattagaataatttctcgaatttatgtagtttcattcaagagactgagctctcccaagagacatgcttatcagtcagccatactgtgctatgttggtacttggtattgttagtgtttaatatgattactgattctggtttctctgtttgcagTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTTTGGCAATTGGCACTGGTTACCCTTGCCGTGGTTC
                                                                                                          || ||  |  ||      | || || |||  | ||  |  |   | || ||||  ||| || |  |||      |  ||| | ||||||||||| || |||||||| || ||||||||||| ||  | ||||||||||||||||| |||||| | ||  | || || || || |||||||
----------------------------------------------------------------------------------------------------------gtaag--aatcttcaaattcttagt-ctttttgtttcttcttccttatctgat--ctgttttt--ttttgggaatctcagCTTGGTAATTTCATCCATTACATGGCGACTTTTGTTTCTGGATTCATCGTGGGTTTCACTGCGGTGTGGCAACTAGCTTTAGTGACTCTCGCGGTGGTTC

upper sequence: GLYMA10G06220.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv08s0007g05060.t01 (Vitis vinifera), 3'ss of exon 3
gtgatctcaaaacacgagcctttgttgttttttgcattagaataatttctcgaatttatgtagtttcattcaagagactgagctctcccaagagacatgcttatcagtcagccatactgtgctatgttggtacttggtattgttagtgtttaatatgattactgattctggt-ttctctgtttgcagTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTTTGGCAATTGGCACTGGTTACCCTTGCCGTGGTTC
                                                                                 |     |||| |   |||  | |   ||  |  | || |  |   || ||| ||| ||   ||||   | ||||    |  |  | |  || || ||||   | |||||||||||||||||||||||||||| |||||||| ||||| ||||| |||||||||||||| || |||||||||||||| || || ||||| |||||||
---------------------------------------------------------------------------------gtgaaaccaaaacctatgtctgttc-tccacatttctttcttggttttgtatttgata--attagctctgaatagacctggttttccctgtgttttctgggcgtagTTGGGTAATTTCATTCACTACATGGCAACATTTGTGTCTGGATTTGTAGTGGGTTTCACTGCTGTGTGGCAATTGGCACTTGTCACTCTTGCTGTGGTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttggtattgttagtgtttaatatgattactgattctggtttctctgtttgcagTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGCTTTGTTGTGGGTTTCACTGCGGTTTGGCAATTGGCACTGGTTACCCTTGCCGTGGTTC
                            tactgat  putative branch site (score: 2)
                                        tttctctgttt  putative PPT
               tgtttaatatgatta  TA-rich tract