1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atagtgtgttaaagaatgtgttgctggcatttttcttcaataaatatactcttttctagaagaccaatactaaaaaaaatgtgcattgtcatatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAGTAACATAGCTCATGTTAGGGACTTATCTTCAATGCTTACTCTTGCTGT
species | Glycine max |
transcript | GLYMA10G03200.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|20498478|gb|BQ273408.1|BQ273408
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGC-ACTGCAACTCAEST: gi|8669439|gb|BE190546.1|BE190546
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|209729821|gb|BW658626.1|BW658626
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|7639890|gb|AW734203.1|AW734203
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|22928688|gb|BU545827.1|BU545827
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|20814787|gb|BQ299265.1|BQ299265
genomic: CAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
genomic: CATGATTGGGTCTGGCAACAACAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
atactcttttctagaagaccaatactaaaaaaaatgtgcattgtcatatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAGTAACATAGCTCATGTTAGGGACTTATCTTCAATGCTTACTCTTGCTGT
tactaaa putative branch site (score: 1)
aatactaaaaaaaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atagtgtgttaaagaatgtgttgctggcatttttcttcaataaatatactcttttctagaagaccaatactaaaaaaaatgtgcattgtcatatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAGTAACATAGCTCATGTTAGGGACTTATCTTCAATGCTTACTCTTGCTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -gtgtgtt
- - - - - - -gaatgtg
- - - - - - - - - - -tgctggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcattg