1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatttccagcagactattgctagtttagtagtttaagttttttcctcttattttccttgcttctctttctgtcttgtccagcattggtatatttatatatatcatttgcatgaatgctgtcattgttaaaagatcttcttgattcagGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCT
species | Glycine max |
transcript | GLYMA09G40110.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAATTTGGTCTTGAGTTATGTGATGATTCAGATGACCCAAGTCAAGCTTG GTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTA
genomic: GAATTTGGTCTTGAGTTATGTGATGATTCAGATGACCCAAGTCAAGCTTGgtaatttcca ... cttgattcagGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTA
ttatatatatcatttgcatgaatgctgtcattgttaaaagatcttcttgattcagGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCT
tcttgat putative branch site (score: 4)
tcttctt CT-rich tract
tatatcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttccagcagactattgctagtttagtagtttaagttttttcctcttattttccttgcttctctttctgtcttgtccagcattggtatatttatatatatcatttgcatgaatgctgtcattgttaaaagatcttcttgattcagGTACTTCAAATTGAAGAAATGTGTCAGTAGGACATATGTTAAAGGAGATTATGCTATTGGGATAATTCCCAAGTGGCCGGAGAGGCTTACTGCAACACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG