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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttcagagtattatgcaatatactaattcttattttgttttcaacgtaacttattttttttaatctgtaaatagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT

Basic information

species Glycine max
transcript GLYMA09G38730.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38730.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G889923_T02 (Zea mays), 3'ss of exon 2
----------------gtaagtttcaga-gtattatgcaatatactaattcttattttgttttcaacgt---aacttattttttttaatctgtaa-atagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT
                 |  ||| ||   ||| || | |||    | |||    | | | ||     |    ||| |  |  | |     ||| | | |||| || |||||||| ||||| ||||||||| | || ||||||||||||||||| || || ||
gtacatattccttgtgctttgttgcatctgtactaagaaatggcatgatttccttgtagcttcttgtgcctgaacattctgatgtggtgttgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT

upper sequence: GLYMA09G38730.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G868168_T04 (Zea mays), 3'ss of exon 5
----------------gtaagtttcaga-gtattatgcaatatactaattcttattttgttttcaacgt---aacttattttttttaatctgtaa-atagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT
                 |  ||| ||   ||| || | |||    | |||    | | | ||     |    | | |  |  | |     ||| | | |||| || |||||||| ||||| ||||||||| | || ||||||||||||||||| || || ||
gtacatattctttgtgctttgttgcatctgtactaagaaatggcatgatttccttgtagcttcttgtgcctgagcattctgatgtggtgttgtgatacagGTCTTTCAAAGTGCTGCACTTTTTGATTCTCTCACAGTTCGTGAAAATGTTGGATTCCTTTT

upper sequence: GLYMA09G38730.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G65410.1 (Arabidopsis thaliana), 3'ss of exon 4
----gtaa-gtttcagagtattatgcaatatactaattcttattttgttttcaacgtaacttattttttttaatctgtaaatagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT
    ||   |||   |||   |||     |||  | |  ||   ||  | || |  |  ||| || ||||   |||    | |||| || || |||||||| |||||||||||  |  | |||||||||||||||||||||||  |
gtaggtgctgttctggagatgtatttctcata--agtcgttgagtttgtatctaaatggctttttgttttctgtct---cacagGTATTTCAGAGTGCAGCTCTCTTTGATTCACTATCAGTTCGTGAAAATGTTGGTTTTCTACT

upper sequence: GLYMA09G38730.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 3'ss of exon 4
-----------gtaagtttcagagtattatgcaatatactaa-ttcttattttgttttcaacgtaact-tattttttttaatctgtaaatagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT
            |||  || || ||||| |    | | |||| || | || ||  |    | |||| | | |||| ||   |    ||| |||| || || ||||| ||||| ||||||||||| ||||||||||||||||||||||| || ||
gtaaaatacttttaaactttag-gtattctttcctgtcctaagttatcatatttctaatcatgtaattctgttttcttctcttctgaaacagGTCTTTCAGAGTGCTGCACTTTTTGATTCTTTAACTGTTCGTGAAAATGTTGGTTTCCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactaattcttattttgttttcaacgtaacttattttttttaatctgtaaatagGTTTTCCAAAGTGCAGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTT
          ttattttgttttcaac  TA-rich tract