1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gcgctagcttacctctgtagattggttgttaagaagatttatatttgtgatgaatctttaattgtttgagcatactaaatgattattttatatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTATTGTGTAATTCCATGGAGAATCCAAGCATAATAATAATAATAATAATAA
species | Glycine max |
transcript | GLYMA09G22600.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAGCCEST: gi|6071962|gb|AW101349.1|AW101349
genomic: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAAGCC
EST: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTAEST: gi|33387487|gb|CA850694.1|CA850694
genomic: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTA
EST: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAGCCAGGGTTGATCAAGAGGGCCTGGTGGTGAGATGTTGTAEST: gi|21285722|gb|BQ473593.1|BQ473593
genomic: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTA
EST: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGGTGTAEST: gi|22522487|gb|BU081298.1|BU081298
genomic: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTA
EST: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTAEST: gi|19269626|gb|BM885882.1|BM885882
genomic: GAGAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTA
EST: AAGAGAA-TGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAG GCAATGAAGAAAGC-AGGGTTGATCAAAAGGGCCTGGTGGTGAGATGT
genomic: A-GAGAAATGATGTCTCCTCAAAATAGGAAGCTAACTCAGCCTCCTGAAGgtgtgtctat ... tatgacatagGCAATGAAGAA-GCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGT
tgtgatgaatctttaattgtttgagcatactaaatgattattttatatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTATTGTGTAATTCCATGGAGAATCCAAGCATAATAATAATAATAATAATAA
tactaaa putative branch site (score: 1)
atactaaatgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcgctagcttacctctgtagattggttgttaagaagatttatatttgtgatgaatctttaattgtttgagcatactaaatgattattttatatgacatagGCAATGAAGAAGCCAGGGTTGATCAAAAGGGCCTGGTGGTGAGATGTTGTATTGTGTAATTCCATGGAGAATCCAAGCATAATAATAATAATAATAATAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - gcttacc
- - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatact