1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttgttgacatgcattatttgtcagagtatattataatgctcttatttcatacatattttacataaatgaactttgtttatggattcttatattgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAAT
species | Glycine max |
transcript | GLYMA08G43230.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAATCCTCTGAAGGTTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|298199617|gb|HO043494.1|HO043494
genomic: AGAAATCCTCTGAAGG-TTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAACACATGEST: gi|209708248|gb|BW678618.1|BW678618
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATG
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCEST: gi|120530250|gb|EH258384.1|EH258384
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCC
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|20498376|gb|BQ273306.1|BQ273306
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCTAAACATGTGAEST: gi|209728275|gb|BW658487.1|BW658487
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|21285679|gb|BQ473550.1|BQ473550
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|298165006|gb|HO011055.1|HO011055
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCGACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|208064645|gb|GD865921.1|GD865921
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|13180762|gb|BG352102.1|BG352102
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|208156781|gb|GD957287.1|GD957287
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACAEST: gi|298163042|gb|HO011775.1|HO011775
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|298179673|gb|HO024888.1|HO024888
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTEST: gi|193664931|gb|FK610891.1|FK610891
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGT
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|15664325|gb|BI701696.1|BI701696
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCTAAACATGTGAEST: gi|193353738|gb|FK319422.1|FK319422
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAA-CNTGTGAEST: gi|209705383|gb|BW668013.1|BW668013
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|207845177|gb|GD816202.1|GD816202
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAAEST: gi|21993868|gb|BQ785396.1|BQ785396
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAEST: gi|15337855|gb|BI498511.1|BI498511
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT C-AAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGEST: gi|17401932|gb|BM178714.1|BM178714
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTG
EST: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCTAAACATGTGAEST: gi|22525413|gb|BU084224.1|BU084224
genomic: AAGAAATCCTCTGAAGGTTTTGGTGCAAGTAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
EST: TAAATACGAGTGGAGAAGAAT CCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
genomic: TAAATACGAGTGGAGAAGAATgtaagttaag ... attgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGA
ttcatacatattttacataaatgaactttgtttatggattcttatattgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAAT
atattttacataaatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgacatgcattatttgtcagagtatattataatgctcttatttcatacatattttacataaatgaactttgtttatggattcttatattgttgcagCCAAATCTGGTATTGATCCTTCCAACTGTGTTGAGCTTGCAAAACATGTGAAATTGAGCTGCCCAAACCTAGTGTACTCTGGCTTAATGACAATAGGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC