1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttattattaaacattatgcaaaaaatagctaacgttacaaaatttaaaaatatatgggtgaatttgtacttgtgttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCGGTGTTGGTGGATTTCCTAGT
species | Glycine max |
transcript | GLYMA08G14670.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|14011656|gb|BG726578.1|BG726578
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: ATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|5678158|gb|AI939288.1|AI939288
genomic: ATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTTCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|22524419|gb|BU083230.1|BU083230
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|26058223|gb|CA801137.1|CA801137
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|31561688|gb|CD487526.1|CD487526
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAEST: gi|120494127|gb|EH222294.1|EH222294
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCA
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAAAACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|120492592|gb|EH220759.1|EH220759
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|15284727|gb|BI468618.1|BI468618
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGEST: gi|120492384|gb|EH220551.1|EH220551
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGG
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|15204497|gb|BI427265.1|BI427265
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: ACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTEST: gi|15203059|gb|BI425827.1|BI425827
genomic: ACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
EST: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAG GACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
genomic: GGAAAATGTTCCTTTCATCAATGGAAGCCCTCAGAACACCTTTGTCCCAGgtttattatt ... ttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACT
taacgttacaaaatttaaaaatatatgggtgaatttgtacttgtgttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCGGTGTTGGTGGATTTCCTAGT
agctaac putative branch site (score: 2)
ttttcatc putative PPT
aaaatttaaaaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttattattaaacattatgcaaaaaatagctaacgttacaaaatttaaaaatatatgggtgaatttgtacttgtgttttcatcagGACTCATTGATCTGGCCATCAAAAGGAATAGTTTGATTGGAGGAGATGACTTTAAGAGTGGTCAGACCAAAATGAAATCGGTGTTGGTGGATTTCCTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA