1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ggtggtagttgtgtcttaataatttcttcttttactcttccttcctaagtgccttttgcatccatgctttatggaaaaatgtgtgcaattgttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
species | Glycine max |
transcript | GLYMA08G11740.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCEST: gi|192307232|gb|FK001232.1|FK001232
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCEST: gi|192325005|gb|FK016146.1|FK016146
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCEST: gi|298187154|gb|HO034303.1|HO034303
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCEST: gi|15287594|gb|BI471485.1|BI471485
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCEST: gi|298177566|gb|HO027233.1|HO027233
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
EST: GACCAGCCCCGAACTCCTGCTCAATCCC GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
genomic: GACCAGCCCCGAACTCCTGCTCAATCCCgtaagatcca ... gttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATC
taagtgccttttgcatccatgctttatggaaaaatgtgtgcaattgttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
aaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtggtagttgtgtcttaataatttcttcttttactcttccttcctaagtgccttttgcatccatgctttatggaaaaatgtgtgcaattgttgttacagGTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAG
ggtggta
- - - - - gtgtctt
- - - - - - - - - - - - - - - - - ctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgc