1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acataattctaattatagatatatcaatctcaaaatgtgtaatttcgaagtaaaaatgtagtatatgtaatttattttgttaagtttgtttcctttacagACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
species | Glycine max |
transcript | GLYMA08G11120.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGG ACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAGEST: gi|208218709|gb|GE017021.1|GE017021
genomic: CTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGgtactcaagt ... tcctttacagACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
EST: CTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGG ACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
genomic: CTCTTGAAAGGCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGgtactcaagt ... tcctttacagACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
cgaagtaaaaatgtagtatatgtaatttattttgttaagtttgtttcctttacagACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
tttgtttcctttac CT-rich tract
taaaaatgtagtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acataattctaattatagatatatcaatctcaaaatgtgtaatttcgaagtaaaaatgtagtatatgtaatttattttgttaagtttgtttcctttacagACCCAGTTCATGCTGGATCAGCTCTCTGATCTTCAACGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - caatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtag