1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagttcattctgtggtatatgtacatttactatttttctttttaatgagtatgggatattgctattttggtggcctgattatgagtttatgactttgatgctacatgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
species | Glycine max |
transcript | GLYMA08G09640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACTGTTCTGGGCTGAGATTTATTACCAG GCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|58024096|gb|CX710837.1|CX710837
genomic: ACTGTTCTGGGCTGAGATTTATTACCAGgcaagttcat ... tgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGTGCCGTATCTACTGATGTTCTCAGACCAAGTTTCTATACGATTAATEST: gi|213611111|gb|DB972699.1|DB972699
genomic: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttcat ... tgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGEST: gi|58023915|gb|CX710656.1|CX710656
genomic: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttcat ... tgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACG
EST: CTGGGCTGAGATTTATTACCAG GCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|192314057|gb|FK008797.1|FK008797
genomic: CTGGGCTGAGATTTATTACCAGgcaagttcat ... tgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGTGCCGTATCTACTGATGGTCTCAGACTAAGTTTCTATACGATTAAT
genomic: TTACAACTTATGCGCTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttcat ... tgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
gctattttggtggcctgattatgagtttatgactttgatgctacatgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
tgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttcattctgtggtatatgtacatttactatttttctttttaatgagtatgggatattgctattttggtggcctgattatgagtttatgactttgatgctacatgttttgcagGCACGTGCCGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG