1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgacattgttggaacttgtagtcggttgttagaaggtttgcatttctctatgaatcataaagtgtatgatgaagctgaatcgtgtgtatgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTATCATGTAATTCAGGTGAGAATCAAAGAATAATAATGTAAATAGTTATAT
species | Glycine max |
transcript | GLYMA08G04710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTAEST: gi|18041432|gb|BM309726.1|BM309726
genomic: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
EST: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTAEST: gi|192319053|gb|FK010617.1|FK010617
genomic: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
EST: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGCTGTAEST: gi|7029314|gb|AW459097.1|AW459097
genomic: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
EST: ATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTAEST: gi|18716865|gb|BM522906.1|BM522906
genomic: ATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
EST: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTAEST: gi|10252728|gb|BE820494.1|BE820494
genomic: GAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
EST: ATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
genomic: ATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTA
ttctctatgaatcataaagtgtatgatgaagctgaatcgtgtgtatgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTATCATGTAATTCAGGTGAGAATCAAAGAATAATAATGTAAATAGTTATAT
ctttt CT-rich tract
aatcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgacattgttggaacttgtagtcggttgttagaaggtttgcatttctctatgaatcataaagtgtatgatgaagctgaatcgtgtgtatgacttttagGCAATGAAGATGGCAGGATTGATCAAAAGGGGCTGGTGCTGAGATGTTGTATCATGTAATTCAGGTGAGAATCAAAGAATAATAATGTAAATAGTTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - -ttgttgg
- - - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgtgtg