1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatggatttttgtttcttctatgctaccttatcaaatactaaatttctgtgtttgggagtgattcctttggttttgtgttgtacttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG
species | Glycine max |
transcript | GLYMA06G15380.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|254343935|gb|GR857691.1|GR857691
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|120534511|gb|EH262644.1|EH262644
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|298186819|gb|HO037452.1|HO037452
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|120534428|gb|EH262561.1|EH262561
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|120530869|gb|EH259002.1|EH259002
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|298175747|gb|HO018344.1|HO018344
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGAAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|298191598|gb|HO039077.1|HO039077
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCAEST: gi|15337539|gb|BI498195.1|BI498195
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAEST: gi|298172713|gb|HO019753.1|HO019753
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
EST: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCC TTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
genomic: TCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCgtatggattt ... acttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAA
actaaatttctgtgtttgggagtgattcctttggttttgtgttgtacttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG
tactaaa putative branch site (score: 1)
cttgccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggatttttgtttcttctatgctaccttatcaaatactaaatttctgtgtttgggagtgattcctttggttttgtgttgtacttgcccagTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA