Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttcattgtgaagtttgagctactgagaataatttggttgtgcctttcaatgaataagctattttattttgtacaattacctctaataatttttgctttgcagAATTTTCTTTTTGTCTCTAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAG

Basic information

species Glycine max
transcript GLYMA06G13920.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13920.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv16s0098g01140.t01 (Vitis vinifera), 3'ss of exon 4
--------------------------------------------------------gtatttcattgtgaagtttgagct---actgagaataatttggttgtgcctttcaatgaataa--gctatttt-attttgtacaattacctctaataatttttg---ctttgcagAATTTTCTTTTTGTCTCTAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAG
                                                        | | |  | ||  |   ||  |||   || |  ||   | || || ||        ||  |||  |  |||   | |||  |||| |  || || | | || |    || |||||||||||||||||  | | |  || |||||||||  |||||| |||||||||||||| || ||||||||| ||||  |||
gtatagtctaatgaacataatatatatgttattaatttaactctattgttgtatatggaatgaactgatagtcttctgcttgcacagtcaactgtgtgcttatgtgccattgtgtctaattgtcattcccactttcaacaaattactttatttacttctaattctctgcagAATTTTCTTTTTACCACAAGGGATGAGGATGCTCCGATGAAGGTTATTGATTTTGGTCTTTCTGATTTTATTAGAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgaataagctattttattttgtacaattacctctaataatttttgctttgcagAATTTTCTTTTTGTCTCTAAAGAAGAGGATGCTGTGATGAAAGTTATTGATTTTGGGCTATCTGATTTTGTTAGGCCAG
                                ctctaat  putative branch site (score: 3)
                                         tttttgcttt  putative PPT
           tattttattttgtaca  TA-rich tract