1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcctcgtactttttggtaattcacagatatctctgatttatttgctcagtgcctgataaaagtctatggcatgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG
species | Glycine max |
transcript | GLYMA06G06850.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|7283823|gb|AW596425.1|AW596425
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTNTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|5760433|gb|AI965724.1|AI965724
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|213600601|gb|DB960149.1|DB960149
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|208274892|gb|GE069728.1|GE069728
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|193469053|gb|FK433705.1|FK433705
genomic: ATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: AAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|6455159|gb|AW185842.1|AW185842
genomic: AAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAEST: gi|298191445|gb|HO038924.1|HO038924
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
EST: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAG ATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
genomic: ATGCTAATCAAAGAATGCCAATCATCTACGTAAAACTTTATATGTACCAGgtaagcctcg ... atgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGA
gatatctctgatttatttgctcagtgcctgataaaagtctatggcatgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG
gcctgat putative branch site (score: 4)
tgatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcctcgtactttttggtaattcacagatatctctgatttatttgctcagtgcctgataaaagtctatggcatgtgtgtagATTTTCAGGGGGTTGGCTTACATCCACACTGGTCCCAAAGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC