Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttggcgtgcgccatgcatgcagtatagaatattttttggtttcttttccttctattgtttgttttttctcctcatatcaattggtttgccatattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCCAAGTATAATGTTTTCTGCTTTATTTTT

Basic information

species Glycine max
transcript GLYMA05G37470.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10253392|gb|BE821158.1|BE821158
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|213601154|gb|DB956476.1|DB956476
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTC
EST: gi|31460826|gb|CD402854.1|CD402854
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|42722469|gb|CK768368.1|CK768368
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|33389315|gb|CA852522.1|CA852522
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|26059702|gb|CA802616.1|CA802616
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGGTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209707969|gb|BW657051.1|BW657051
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGTATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|37996294|gb|CF807883.1|CF807883
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGT
EST: gi|254337589|gb|GR849435.1|GR849435
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|13562996|gb|BG551216.1|BG551216
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151397420|gb|EV267293.1|EV267293
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGTTCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|298189750|gb|HO038153.1|HO038153
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCCGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTT
EST: gi|193630095|gb|FK573350.1|FK573350
EST:     TTGGAGGGGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|21677400|gb|BQ629751.1|BQ629751
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208322795|gb|GE123452.1|GE123452
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTAGGAATCTGGTGGTTTTGGAG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGT-GGA-TCTGGTGGTTTTGGAG
EST: gi|208052328|gb|GD855223.1|GD855223
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|254337590|gb|GR849436.1|GR849436
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193587760|gb|FK542249.1|FK542249
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|151397532|gb|EV267405.1|EV267405
EST:     TTGGAGGAGACGAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|20498285|gb|BQ273215.1|BQ273215
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGG
EST: gi|31307853|gb|CD393056.1|CD393056
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGCTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|16349566|gb|BI975161.1|BI975161
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGT
EST: gi|10846853|gb|BF069589.1|BF069589
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|213603975|gb|DB974874.1|DB974874
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|18734245|gb|BM528073.1|BM528073
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGG
EST: gi|208248394|gb|GE047097.1|GE047097
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|15815258|gb|BI787533.1|BI787533
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTTGG                         GGTCCTGGCGGAAAGCCCGGCTTTGGGCGTGGATCTGGGGGGTTTTGGAGC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGG-TTTTGGAGC
EST: gi|13791425|gb|BG654016.1|BG654016
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193380747|gb|FK346030.1|FK346030
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTT-GG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|7030059|gb|AW459842.1|AW459842
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|10709798|gb|BF009522.1|BF009522
EST:     TTGGAGGAGACATGGGAGGAGCTCCTGCTGACTACAGGCACTCATTTGAG                         GGTCCTGGCAGAAGGCCC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCC
EST: gi|298186733|gb|HO037366.1|HO037366
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAA
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAA
EST: gi|20075911|gb|BQ094694.1|BQ094694
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207848632|gb|GD820189.1|GD820189
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGG
genomic: T-GGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGG
EST: gi|208086112|gb|GD885152.1|GD885152
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209705995|gb|BW664866.1|BW664866
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|7284353|gb|AW596946.1|AW596946
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209705994|gb|BW664865.1|BW664865
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193490146|gb|FK453717.1|FK453717
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGG
EST: gi|23063617|gb|BU578588.1|BU578588
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|209707970|gb|BW657052.1|BW657052
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCTTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|193307272|gb|FK272442.1|FK272442
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|254323237|gb|GR840042.1|GR840042
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|31470942|gb|CD412970.1|CD412970
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207766346|gb|GD736490.1|GD736490
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207795748|gb|GD767263.1|GD767263
EST:     GGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGG-TTTGGNGCG
genomic: GGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207795140|gb|GD765395.1|GD765395
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|254323236|gb|GR840041.1|GR840041
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|10844453|gb|BF070996.1|BF070996
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208301001|gb|GE097322.1|GE097322
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|207839736|gb|GD810825.1|GD810825
EST:     TACAGGCCCTC-TTTGGG                         GG-CCNGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|21888936|gb|BQ742149.1|BQ742149
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|18038860|gb|BM307154.1|BM307154
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTTGG                         GGTCCTGGCGGAAAGGCC-GGCTTTGGTCGTGGATCTGGTGGTTTTGGAGC
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAA-GGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGC
EST: gi|209711440|gb|BW665192.1|BW665192
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|23063898|gb|BU578672.1|BU578672
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGGCCTCTTTTGGG                         GGTCCTGGCGGAAGGCC-GGCT
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCT
EST: gi|207844030|gb|GD816945.1|GD816945
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
EST: gi|208118910|gb|GD918775.1|GD918775
EST:     TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGG                         GGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG
genomic: TTGGAGGAGACAAGGGAGGAGCTCCTGCTGACTACAGGCCCTCTTTTGGGgtaatcttat ... catattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccttctattgtttgttttttctcctcatatcaattggtttgccatattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCCAAGTATAATGTTTTCTGCTTTATTTTT
        tattgtttgtttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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tttggcgtgcgccatgcatgcagtatagaatattttttggtttcttttccttctattgtttgttttttctcctcatatcaattggtttgccatattgcagGGTCCTGGCGGAAGGCCCGGCTTTGGTCGTGGATCTGGTGGTTTTGGAGCGCCAACCAGCTCAAATCTTCCCCAAGTATAATGTTTTCTGCTTTATTTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- -ggcgtgc
- - - - - -ccatgca
- - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtttg