1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgacactgttgaaacttgtagtcggttgttagaagattcgcatttctcctatgaatcgtaaagtgtaagatgaagctgaatcgtgtgttatgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGTCATGTAATTCAGGTGAGAACCAAAGAATAATAATGTAAATAATTCAAT
species | Glycine max |
transcript | GLYMA05G35000.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|209720209|gb|BW674547.1|BW674547
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: ATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|15201955|gb|BI425146.1|BI425146
genomic: ATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|254342628|gb|GR858790.1|GR858790
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|192319728|gb|FK011866.1|FK011866
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGTTCTGAGATGTTGTGEST: gi|213602828|gb|DB978159.1|DB978159
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: AAAATCGGAAGCTAGCTCAGCTACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCCCTGAGATGTTGTGEST: gi|208143661|gb|GD943378.1|GD943378
genomic: AAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: CACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|19934908|gb|BQ079938.1|BQ079938
genomic: CACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|21889833|gb|BQ743046.1|BQ743046
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGEST: gi|24135406|gb|BU925916.1|BU925916
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
EST: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAG GCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
genomic: GAAAGAAATGATATCTCCACAAAATCGGAAGCTAGCTCAGCCACCTGAAGgtgtgtcaat ... tgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTG
ctcctatgaatcgtaaagtgtaagatgaagctgaatcgtgtgttatgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGTCATGTAATTCAGGTGAGAACCAAAGAATAATAATGTAAATAATTCAAT
ctttt CT-rich tract
actttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgacactgttgaaacttgtagtcggttgttagaagattcgcatttctcctatgaatcgtaaagtgtaagatgaagctgaatcgtgtgttatgacttttagGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTTGCTCTGAGATGTTGTGTCATGTAATTCAGGTGAGAACCAAAGAATAATAATGTAAATAATTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - actgttg
- - - - - - - - - - - -ggttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcgtgtg