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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagtatctaatttgctgtgttaatgttttttctattatcttattatatttttcatcaaatgatttttttatttgtttattttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG

Basic information

species Glycine max
transcript GLYMA05G31920.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G31920.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0074g00720.t01 (Vitis vinifera), 3'ss of exon 6
----gtacagtatctaatttgctgtgttaatgttttttctattatcttattatatttttcatcaaatgatttttttatttgtttattttttg--gcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
    | |    |||| | |  || || || |  ||||| | || | |   | |  |||   |    | || |   |||| | ||   |||||  ||||||| |||||||||||||||||||| |||||||||||  |||||||||||
gtaagaattccatcttactgcctatgctattcctttttttttt-tttccctttgatttgattgttttcatgtcactattggattgcattttgatgcagGCCTTGGTCCTACCATAATGCAGGTTCCTGGCCAACTTTGCTCTGGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209712109|gb|BW676726.1|BW676726
EST:     CAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: gi|51343512|gb|CO984245.1|CO984245
EST:     CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: gi|208112271|gb|GD913684.1|GD913684
EST:     CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATACAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: gi|208063578|gb|GD861508.1|GD861508
EST:     CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATGCAGGC
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGC
EST: gi|192306267|gb|FG995075.1|FG995075
EST:     CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
EST: gi|192306268|gb|FG995076.1|FG995076
EST:     CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACAC                         GCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
genomic: CTTGATGGTCAGGAGTGGCAGATAATCACAGGCAGTGATCCTAAGAACACgtacagtatc ... tttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatcttattatatttttcatcaaatgatttttttatttgtttattttttggcagGCCATGGTCCTACCATAATGCAGGCTCCTGGCCAACACTGCTCTGGCAG
                            tttttttatttgttta  CT-rich tract
     ttattatatttttcat  TA-rich tract