1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaggtctaatcataatctatttatatactattactcagtttgaaactcgctcataccctatatatgtgtgttatgaaattaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACCTAGTTGTGGGACTAAACGACACCATG
species | Glycine max |
transcript | GLYMA05G31450.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAACGAAAGCACTAAGGTTGAEST: gi|22525230|gb|BU084041.1|BU084041
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGA
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|7028502|gb|AW458285.1|AW458285
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|19346456|gb|BM891336.1|BM891336
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAAGTTGACAAAGTGGTTGTCCTGTGGACAGCEST: gi|15285656|gb|BI469547.1|BI469547
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|7639970|gb|AW734281.1|AW734281
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: TCAAGGGCACNAAGGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|20449596|gb|BQ253720.1|BQ253720
genomic: TCAAGGGCAC-AAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|193487523|gb|FK449676.1|FK449676
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: CACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|208208660|gb|GE005940.1|GE005940
genomic: CACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTC-TGTGGACAGCEST: gi|20813012|gb|BQ297490.1|BQ297490
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|208137406|gb|GD938854.1|GD938854
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|193378032|gb|FK344569.1|FK344569
genomic: ATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: TCGAA-GGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|193388618|gb|FK357507.1|FK357507
genomic: TC-AAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|208280931|gb|GE077209.1|GE077209
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: GCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|192301388|gb|FG994712.1|FG994712
genomic: GCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGAGGTTGTCCTGTGGACAGCEST: gi|193617169|gb|FK571195.1|FK571195
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|208221088|gb|GE020758.1|GE020758
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: TCAAGGGCACAAAGAAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGAACAAEST: gi|208263677|gb|GE063853.1|GE063853
genomic: TCAAGGGCACAAAGAAA-GAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGA-CA-
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|193549969|gb|FK505942.1|FK505942
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAEST: gi|207839385|gb|GD811230.1|GD811230
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACA
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCEST: gi|208298162|gb|GE091053.1|GE091053
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|193512445|gb|FK469041.1|FK469041
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: TCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCAATCAAAGACATTAA GGAGTTTAAGGAAAGEST: gi|193469741|gb|FK434576.1|FK434576
genomic: TCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCA-TCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAG
EST: AGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|120533531|gb|EH261664.1|EH261664
genomic: AGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAA-GACATTAA GGAGTT-AAGGAAAGCAEST: gi|120529530|gb|EH257664.1|EH257664
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCA
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|8670153|gb|BE191260.1|BE191260
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|9204872|gb|BE331096.1|BE331096
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|9986211|gb|BE660319.1|BE660319
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAANGTTGACAAGGTGGTTGTCCTGTGGACAGTEST: gi|208292998|gb|GE096318.1|GE096318
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|207834225|gb|GD808548.1|GD808548
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGEST: gi|207772158|gb|GD744879.1|GD744879
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAG
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGEST: gi|14259658|gb|BG882566.1|BG882566
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGG
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|6913694|gb|AW395224.1|AW395224
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCEST: gi|207784988|gb|GD756065.1|GD756065
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGEST: gi|193375287|gb|FK342507.1|FK342507
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTG
EST: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAA GGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
genomic: ATCAAGGGCACAAAGAAAGAACAAGTTCAACAAATCATCAAAGACATTAAgtaggtctaa ... ttaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGC
ctcagtttgaaactcgctcataccctatatatgtgtgttatgaaattaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACCTAGTTGTGGGACTAAACGACACCATG
tatatatgtgtgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtctaatcataatctatttatatactattactcagtttgaaactcgctcataccctatatatgtgtgttatgaaattaaatttagGGAGTTTAAGGAAAGCACTAAGGTTGACAAGGTGGTTGTCCTGTGGACAGCCAACACAGAGAGGTACAGCAACCTAGTTGTGGGACTAAACGACACCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG