1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
species | Glycine max |
transcript | GLYMA05G26630.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|213600472|gb|DB970324.1|DB970324
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|151402287|gb|EV272100.1|EV272100
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|254327807|gb|GR834772.1|GR834772
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|213593691|gb|DB971713.1|DB971713
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCEST: gi|209706563|gb|BW676111.1|BW676111
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTC
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|192324953|gb|FK015404.1|FK015404
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|213602225|gb|DB958485.1|DB958485
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATEST: gi|151408492|gb|EV278300.1|EV278300
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
EST: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAG GCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACAATTAAT
genomic: TTACAACTTATGCACTGTTGGTACTGTTCTGGGCTGAGATTTATTACCAGgcaagttgaa ... tgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAAT
gttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
cctgttt CT-rich tract
tatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaagttgaattcgtggtgcatttttactgtttttctttttaattagcttgggatgttgctattttggtggcctgattatgactttgatgctacgttacctgtttggcagGCACGCGCAGTATCTACTGATGGTCTCAGACCAAGTTTCTATACGATTAATGCTGTGGTTTATGTTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG