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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atatccttggttggattcaaattattaggatcaccaaaaattgttttaacctgagtgatcattgccactatgcttttatttaatagcaaccttgaccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGATAGTCGTCCTGATCACATCCTGAATCTTATACATTATGAG

Basic information

species Glycine max
transcript GLYMA05G26450.1
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G26450.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g01880.t01 (Vitis vinifera), 3'ss of exon 5
atatccttggttggattcaaattattaggatcaccaaaaattgttttaacctgagtgatcattgccactatgcttttatttaatagcaaccttgaccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGATAGTCGTCCTGATCACATCCTGAATCTTATACATTATGAG
       | ||  |||| |    ||    ||    || |    ||| |    || | ||    |  |  |   |  ||||   ||| |||||| || | |   ||||||||||||||||||||||   |||||  ||| | || ||   ||||||    || |||||||||||||| ||||||||||| ||||||
------gttgtgagattta---catctatatttgtaagagagatttcag--ggattcatggaggaaatcagtatcatattct-tagtaaccttaactattggcacaaagcagatagAGGTGCACATGTTTATTGGTTGAAGAAAGGGACTGTTGAAGCCCGCCCTGATCACATCCTCAATCTTATACACTATGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825955|gb|BE209685.1|BE209685
EST:     ATGTGG-ACTGGAGTTTGGTGGCTGTGTTGTGAGATTGGCGGGACTATAT                         AAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGAT
genomic: ATGTGGTACTGGAGTTTGGTGGCTGTGTTGTGAGATTGGCGGGACTATATatatccttgg ... ccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGAT
EST: gi|120494805|gb|EH222972.1|EH222972
EST:     TGTGAGATTGCCGGGACTATAT                         -AATCAGATAGAGGTGCACACAAGTATTTCTTGGAAAAGGGTNTTGTTGAT
genomic: TGTGAGATTGGCGGGACTATATatatccttgg ... ccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGAT
EST: gi|8826056|gb|BE209848.1|BE209848
EST:     ATGTGGTACTGGAGTTTGGTGGCTGTGTTGTGAGATTGGCGGGACTATAT                         AAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGAT
genomic: ATGTGGTACTGGAGTTTGGTGGCTGTGTTGTGAGATTGGCGGGACTATATatatccttgg ... ccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgagtgatcattgccactatgcttttatttaatagcaaccttgaccaattttacAAAGCAGATAGAGGTGCACACAATTATTTCTTGGAAAAGGGTGTTGTTGATAGTCGTCCTGATCACATCCTGAATCTTATACATTATGAG
 aaccttgac  putative branch site 
                  tatgcttttatttaat  TA-rich tract