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gttgaaagccgtgttctttgtgtctggatgtgccatgtttgaatgctttacttaacccggtgatgaattaagctgttgattgcggttttgtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGA
species | Glycine max |
transcript | GLYMA04G38010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAG GTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAAEST: gi|209720121|gb|BW651150.1|BW651150
genomic: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAGgttgaaagcc ... gtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAA
EST: ATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAG GTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAAEST: gi|254332518|gb|GR846456.1|GR846456
genomic: ATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAGgttgaaagcc ... gtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAA
EST: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAG GTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAAEST: gi|193484412|gb|FK450236.1|FK450236
genomic: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAGgttgaaagcc ... gtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAA
EST: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAG GTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAA
genomic: TCGGGGACAAGAATGTTGCCATGCTTGTTGTTTCTCAGGGATGGGTTAAGgttgaaagcc ... gtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAA
gctttacttaacccggtgatgaattaagctgttgattgcggttttgtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGA
atgaattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgaaagccgtgttctttgtgtctggatgtgccatgtttgaatgctttacttaacccggtgatgaattaagctgttgattgcggttttgtgcatgcagGTCAGGGAACAGGGGCAGCAGAAAGGAGAAGTTAGTCCGTACCTGGCAGAATTGTTGCGGTTGGAAGAACAGGCTAAACAAGAAGGCCTTGGGCGGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA