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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgatatcttttggcttttgttttctgagatatgttttctgccttttatgttttatgaagttacccatgtgttctctgatttggtccatattattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGTTTAT

Basic information

species Glycine max
transcript GLYMA04G37030.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37030.3 (Glycine max), 3'ss of exon 4
lower sequence: AT3G26340.1 (Arabidopsis thaliana), 3'ss of exon 4
tttgatatcttttggct-tttgttttctgagatatgttttctgccttttatgttttatgaagttacccatgtgttctctgatttggtccatattattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGTTTAT
   | | | |  |     |||| || || |  | | |       ||    | | ||   |   |  || ||          |||  |   | | ||  ||||| ||| | |||||| ||||||| ||||||||||| || ||  ||||||| |||||||| ||||| || ||  | || || ||||||||||||||  | |
ccagttttatcctaatagtttgattgctaacttgtataccaaatctggattatgttgaaactatgaccctgatagagagtgttttatttgtgt-atcatagTGCCGTCTACATGAGCTGGCAAACAAAAGGAGAATCTCTGTTTCAGGAGCTTCAAAGCTTCTTGCTAACATGCTCTATTCATATCGTGGAATGGGACTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254321270|gb|GR824587.1|GR824587
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|58021915|gb|CX708656.1|CX708656
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTGGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|193462440|gb|FK425525.1|FK425525
EST:     CTGGAGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|6227844|gb|AW156443.1|AW156443
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAANTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|254338527|gb|GR849945.1|GR849945
EST:     CTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|192322800|gb|FK014491.1|FK014491
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|254322198|gb|GR837612.1|GR837612
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|8827593|gb|BE211323.1|BE211323
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|192319717|gb|FK013759.1|FK013759
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|151410487|gb|EV280302.1|EV280302
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCGTGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|15814359|gb|BI786634.1|BI786634
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|193584124|gb|FK541504.1|FK541504
EST:     CTGGAGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|192319718|gb|FK013760.1|FK013760
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|298189385|gb|HO037788.1|HO037788
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
EST: gi|58014664|gb|CX701406.1|CX701406
EST:     CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAG                         TGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC
genomic: CTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGgtaatctttg ... attattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgttttatgaagttacccatgtgttctctgatttggtccatattattttagTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGTTTAT
                             ctctgat  putative branch site (score: 4)
                                              ttatttt  putative PPT
                                        tccatattatttta  TA-rich tract