Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgcatgcattcatccttttttgacgaattaggaatttatgttgtcttgtttgtgttactgtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGCCCTATTGATTTTGGCGTACCTATTCCATCGAAGGTTGAGGTTGAAAGGT

Basic information

species Glycine max
transcript GLYMA03G42430.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193644142|gb|FK592491.1|FK592491
EST:     TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCGTTACGG
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
EST: gi|254329055|gb|GR833427.1|GR833427
EST:     TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
EST: gi|8670487|gb|BE191594.1|BE191594
EST:     TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
EST: gi|31473972|gb|CD416000.1|CD416000
EST:     TTGCTCACAGTATGTATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
EST: gi|22927216|gb|BU544355.1|BU544355
EST:     TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
EST: gi|7639253|gb|AW733580.1|AW733580
EST:     TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAG                         TTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC
genomic: TTGCTCACAGTATGAATAAACCAGTTTATGTCGCTGCTGAGAGCTACAAGgtatatttgc ... gtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttttgacgaattaggaatttatgttgtcttgtttgtgttactgtgcctgcagTTTGCTCGCCTTTACCCTCTTGACCAAAAGGATTTAGCCCCTGCATTACGCCCTATTGATTTTGGCGTACCTATTCCATCGAAGGTTGAGGTTGAAAGGT
   ttttgac  putative branch site (score: 3)
           aattaggaatttat  TA-rich tract