1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttttgcacagcaccctttaaataaagtaactttaataccccacttctaaatctttcttgtaatgtatagtttgcataaaccaggatttgttttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAAGGTTTCTGCTCTGTCTACTGTGTGAGTGGGAAGGATGTAGAGGGCCCA
species | Glycine max |
transcript | GLYMA03G39530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|213613616|gb|DB963304.1|DB963304
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|151403727|gb|EV273537.1|EV273537
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACCGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|7692294|gb|AW760404.1|AW760404
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192295129|gb|FG986848.1|FG986848
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192303311|gb|FG995619.1|FG995619
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192322679|gb|FK015016.1|FK015016
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: ACCTGCCACAGACGAAGAACTTTTCATCTCCATATATTGAAGAATTTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAEST: gi|298184947|gb|HO030160.1|HO030160
genomic: ACCTGCCACAGACGAAGAACTTT-CATCTCCATATATTGAAGAATTT-CGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|193654550|gb|FK597860.1|FK597860
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: ACGAAGAACTTTCATCTCCACATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|9903152|gb|BE612120.1|BE612120
genomic: ACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|21677242|gb|BQ629593.1|BQ629593
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|18040959|gb|BM309253.1|BM309253
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|24135512|gb|BU926022.1|BU926022
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|9987385|gb|BE661493.1|BE661493
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|151397822|gb|EV267695.1|EV267695
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|22541742|gb|BU091585.1|BU091585
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGATACTTATCCAAAEST: gi|192313101|gb|FK004691.1|FK004691
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192299932|gb|FG992145.1|FG992145
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTEST: gi|298194345|gb|HO040993.1|HO040993
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTT
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|298180513|gb|HO022066.1|HO022066
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|10231910|gb|BE800798.1|BE800798
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: CTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|151399910|gb|EV269781.1|EV269781
genomic: CTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|192313102|gb|FK004692.1|FK004692
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAEST: gi|9203900|gb|BE330124.1|BE330124
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
EST: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCG ATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
genomic: AGACCTGCCACAGACGAAGAACTTTCATCTCCATATATTGAAGAATTTCGgtaattctga ... tttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAA
ctaaatctttcttgtaatgtatagtttgcataaaccaggatttgttttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAAGGTTTCTGCTCTGTCTACTGTGTGAGTGGGAAGGATGTAGAGGGCCCA
ttctaaa putative branch site (score: 2)
tttgtttt putative PPT
atttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgcacagcaccctttaaataaagtaactttaataccccacttctaaatctttcttgtaatgtatagtttgcataaaccaggatttgttttactgcagATGCAATCTGGATGCTGAAACACTTAAATATGTTGAAGAAACTTATCCAAAAGGTTTCTGCTCTGTCTACTGTGTGAGTGGGAAGGATGTAGAGGGCCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tgcacag
- - - - - caccctt
- - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - -ccccact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggatttg