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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttttttcaagcagattgtcaatatgcttttaaatttttttgaagtcatttaattcatgatgctttcagtatatttattctttgttatatttgattgtagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG

Basic information

species Glycine max
transcript GLYMA03G16660.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151411475|gb|EV281286.1|EV281286
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAgtgagtttat ... ttgattgtagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|151413158|gb|EV282966.1|EV282966
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAgtgagtttat ... ttgattgtagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
EST: gi|9899371|gb|BE608339.1|BE608339
EST:     TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCA                         GTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
genomic: TCATTGCTACCGAGAAGAAATTGCCATCTATATTGGTTGATGAAACATCAgtgagtttat ... ttgattgtagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatttaattcatgatgctttcagtatatttattctttgttatatttgattgtagGTCCAGAAAATTCAGTTATTAACACCAAATATAGGTGTCGTATATAG
                        tatatttattctttgt  TA-rich tract