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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttagcaataagcactcccccaattcctctatagacatttacttaggttcttaatttttagtctgtgtgacattattttttggatgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG

Basic information

species Glycine max
transcript GLYMA02G46580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46580.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os02g37580.1 (Oryza sativa), 3'ss of exon 5
-----gtgagttttagcaataagcactcccccaattcctctatagacatttacttaggttcttaatttttagtctgtgtgacattattttttggatgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG
      |||  | |  | | || |||        |  || ||| ||  | |   ||  || ||||  ||  || |   | ||   | | | |     ||  | |||||||||||||| ||||| || ||| | |||||||||||||||
ctgacttgatgtatgtctacaa-cacattttttgtgactatatgga-gtatgactaaattgttaacatt--gttttgatcactgaaatatct-----ttcttattgcagCCTCATCTAGTTCTTGGTTTGTTATCCCAAATCATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggttcttaatttttagtctgtgtgacattattttttggatgtttatgttgcagCCTCATCTTGTTCTAGGGTTGATTTCCCAAATCATAAAG
     tcttaat  putative branch site (score: 3)
     tcttaatttttagt  TA-rich tract