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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcagtgcatttcattttaaatattttagatgctattgacttaattacttaaatgatttctgcaattttgcaatttaaatcataaattttatcgttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG

Basic information

species Glycine max
transcript GLYMA02G46200.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23064235|gb|BU579008.1|BU579008
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|13481968|gb|BG511311.1|BG511311
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|13251924|gb|BG362827.1|BG362827
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|213615236|gb|DB965044.1|DB965044
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|213616511|gb|DB965709.1|DB965709
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|209721887|gb|BW680046.1|BW680046
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|193557293|gb|FK511606.1|FK511606
EST:     TCGTTCAGGCGGGTGTGGATTTGTCCAGAACTTCAGTCACATAACTCCTG                         GAAGCTGGATTAATTCAAAGACCTAATAGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAG-CCTA-T-GAG
EST: gi|120491274|gb|EH219441.1|EH219441
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|208079599|gb|GD875787.1|GD875787
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|209726695|gb|BW672449.1|BW672449
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|298170020|gb|HO018644.1|HO018644
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAGAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|7924360|gb|AW830386.1|AW830386
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
EST: gi|298174924|gb|HO014841.1|HO014841
EST:     TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTG                         GAAGCTGGATTAATTCAAAGCCTATGAG
genomic: TCGTTCAGGCGGATGTGGATTTGTCCAGAACTTCAGTCATATAACTCCTGgtaattttca ... gttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatgatttctgcaattttgcaatttaaatcataaattttatcgttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG
               aattttgcaatttaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattttcagtgcatttcattttaaatattttagatgctattgacttaattacttaaatgatttctgcaattttgcaatttaaatcataaattttatcgttgttgcagGAAGCTGGATTAATTCAAAGCCTATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA