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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttctgtcataataactgatttactgaaaaatgttttctttgtagtaacactgcaataatatggtggctgatctatattgaattgctataattttgcagGTGATGAGTGTTAAAGCCCTTGGAACTTCTTTGAAATTAACTTTTGAAGGGAAAAATCAGTTAATCTACCCAGAGACATGGTTTTTTATGTTAGTTGTTG

Basic information

species Glycine max
transcript GLYMA02G44980.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44980.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g03650.t01 (Vitis vinifera), 3'ss of exon 5
----atttctgtcataat--aactgatttac-tgaaaaatgttttctttgtagtaacactgcaataatatggtggctgatctatattgaattgctataattttgcagGTGATGAGTGTTAAAGCCCTTGGAACTTCTTTGAAATTAACTTTTGAAGGGAAAAATCAGTTAATCTACCCAGAGACATGGTTTTTTATGTTAGTTGTTG
    ||||||     ||      ||||||   ||||| |  |    |||| | |  || | ||    | ||||  ||||  | | ||    |    | | |||||||||||||||||| |||||||| ||||||||  |||| || || ||||| || || || ||||||||||  || ||||| |||||||| ||| | || || |
aggtatttcttctggaagtgggatgatttggatgaaagaactggcttttgcattctcatt-catc--tgtggtttctgaattttgtt----tttggtcaatttgcagGTGATGAGTGTGAAAGCCCTGGGAACTTCACTGAAGTTGACCTTTGAGGGAAAGAACCAGTTAATCTTTCCGGAGACTTGGTTTTTCATGGTGGTGGTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaacactgcaataatatggtggctgatctatattgaattgctataattttgcagGTGATGAGTGTTAAAGCCCTTGGAACTTCTTTGAAATTAACTTTTGAAGGGAAAAATCAGTTAATCTACCCAGAGACATGGTTTTTTATGTTAGTTGTTG
                             tatattgaattgctat  TA-rich tract