1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
species | Glycine max |
transcript | GLYMA02G17430.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG GTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTGEST: gi|254324586|gb|GR834011.1|GR834011
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
EST: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG GTTATTGACAAAGTCCAGGAGGAAACAAAGAGCCGTACTGEST: gi|298174084|gb|HO017420.1|HO017420
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
EST: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG GTTATTGACAACGTCCAGGAAGAAACAAAGAGCCGTACTG
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
tctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
cactgat putative branch site (score: 3)
tttacttcctgttc putative PPT
tgatttaaatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA