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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtttcattgtacatgtttatactttttctttttcaaaattttttatttagttgtgtactagtgttagtgtgttacccttctcacagaaaggggtctgttcttttttgttatactatcattttaatttcagaagaagtctaatatacaaaatgtttaatttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCATAGGCATTATATCATGTGCAATTTTCAAATTTTGTTATGAATTTCATTC

Basic information

species Glycine max
transcript GLYMA02G00680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151408686|gb|EV278494.1|EV278494
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|31474545|gb|CD416573.1|CD416573
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|7639446|gb|AW733769.1|AW733769
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|41146190|gb|CK606401.1|CK606401
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAGG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|192299057|gb|FG990385.1|FG990385
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|31309420|gb|CD394623.1|CD394623
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|151405848|gb|EV275663.1|EV275663
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|192326906|gb|FK019198.1|FK019198
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|192310170|gb|FK000678.1|FK000678
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|58023951|gb|CX710692.1|CX710692
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|209701605|gb|BW655866.1|BW655866
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|31461690|gb|CD403718.1|CD403718
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|298169651|gb|HO021011.1|HO021011
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGACAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|254348775|gb|GR852454.1|GR852454
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|192310169|gb|FK000677.1|FK000677
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|209701606|gb|BW655867.1|BW655867
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
EST: gi|298171857|gb|HO021449.1|HO021449
EST:     CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAG                         AGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA
genomic: CATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttca ... atttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actatcattttaatttcagaagaagtctaatatacaaaatgtttaatttgtgcagAGGGCAGCTGTTGTTAGGCAAGAGCTTGCTAAGCTGAAGAAAAGTGCATCATAGGCATTATATCATGTGCAATTTTCAAATTTTGTTATGAATTTCATTC
                      aagtctaatatacaaa  TA-rich tract