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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttacgttgcaataatgttttgtttatatttaatatggtggcttctattagaaatgatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTACTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA

Basic information

species Glycine max
transcript GLYMA01G42590.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G42590.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 9
gttacgttgcaataatgttttgttt-atatttaatatggtggcttctattagaaatgatttattttattttatttgtc-tgcagAGTGCTGGGAGTTATTCTTACTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
|||| ||| ||  ||  ||   ||| |||| ||   || |   | ||||| | |    ||||    | ||  | | || |||||| ||||||||     || | |||||||||||| || ||||||||||||||||||||  || | ||| |||||||  ||||| |||| ||||| ||||| |
gttatgtttcaggaaatttggatttcatatctacattgat--ttactatttgga---ttttaaaccacttgctatttcatgcagAATGCTGGGACACGATCATTCTCCATAGGAATCACCGAGGTTCTTAATACAAACCTGTTGATTGAACTAAGTGCTGATGATATAGAATATGTATATCAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttaatatggtggcttctattagaaatgatttattttattttatttgtctgcagAGTGCTGGGAGTTATTCTTACTCCATAGGAATTACAGAGGTTCTTAATACAAACCTTGTGCTAGAATTAAGTGCGAATGATGTAGAGTATGTTTATCAAA
 atttaat  putative branch site (score: 4)
                                       ttttattt  putative PPT
               ttctattagaaatgat  TA-rich tract