1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgcttagctatattttgtccatattgaaattatattatttgtagttattttgtcttaattatctaaattaatgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAAAAAGAATAGTGTTGCACTTGATATTGTTAATTTTGGTGAAGAAGATGAG
species | Glycine max |
transcript | GLYMA01G36990.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CATCGGCAAAATAAAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAG CCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAAEST: gi|208086846|gb|GD881154.1|GD881154
genomic: CATCGGCAAAATAAAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAGgtatgcttag ... tgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAA
EST: GGCAAAAT-AAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAG CCCTGTCAAGCATGAAAAGAAGATGTTGGGGATGATAGGAAGAAAGTTGAAEST: gi|6069798|gb|AW099406.1|AW099406
genomic: GGCAAAATAAAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAGgtatgcttag ... tgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAA
EST: CATCGGCAAAATAAAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAG CCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAA
genomic: CATCGGCAAAATAAAAAACAACAGCAGAGGATTATTGTCTTTGCTGGAAGgtatgcttag ... tgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAA
aaattatattatttgtagttattttgtcttaattatctaaattaatgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAAAAAGAATAGTGTTGCACTTGATATTGTTAATTTTGGTGAAGAAGATGAG
aattaat putative branch site (score: 3)
tgtttttc CT-rich tract
atattatttgtagtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcttagctatattttgtccatattgaaattatattatttgtagttattttgtcttaattatctaaattaatgtttttcagCCCTGTCAAGCATGAAAAGAAGATGTTGGAGATGATAGGAAGAAAGTTGAAAAAGAATAGTGTTGCACTTGATATTGTTAATTTTGGTGAAGAAGATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG