1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ggcattttaccaattcttctactcataactgacacaggagttaagacttttctttgatatgagaatcttcaataatgaactgcaactaatggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
species | Glycine max |
transcript | GLYMA01G03260.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|120529201|gb|EH257335.1|EH257335
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|14205452|gb|BG839130.1|BG839130
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|15285990|gb|BI469890.1|BI469890
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GTGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAATGAAGTGGCTGEST: gi|7283746|gb|AW596349.1|AW596349
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|21887563|gb|BQ740776.1|BQ740776
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|23052838|gb|BU577329.1|BU577329
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGTGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|13481869|gb|BG511212.1|BG511212
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|23056339|gb|BU577717.1|BU577717
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|13480374|gb|BG509717.1|BG509717
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|298167407|gb|HO012670.1|HO012670
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACEST: gi|120491572|gb|EH219739.1|EH219739
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGAC
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|20498442|gb|BQ273372.1|BQ273372
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: GCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|14205590|gb|BG839268.1|BG839268
genomic: GCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|15285988|gb|BI469879.1|BI469879
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGEST: gi|10847451|gb|BF070138.1|BF070138
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
EST: TGCAATTGCAAGAGCTAAACACTATCTNTCATTGACCTCGGGCGGGTTAC GCGCTTATAGTGACTCCCGCCGCCTTCCAEST: gi|213588415|gb|DB959735.1|DB959735
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCA
EST: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAG GCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
genomic: TGCAATTGCAAGAGCTAAACACTATCTTTCATTGACCTCGGGCGGTTTAGgtattcatat ... ggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTG
acttttctttgatatgagaatcttcaataatgaactgcaactaatggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
aactaat putative branch site (score: 2)
ttcaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcattttaccaattcttctactcataactgacacaggagttaagacttttctttgatatgagaatcttcaataatgaactgcaactaatggtgatgcagGCGCTTATAGTGACTCCCGCGGCCTTCCAGGAGTGAGGAAGGAAGTGGCTGAGTTCATACTCAGGCGTGATGGTTATCCAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
ggcattt
- - - - - - - - - ctactca
- - - - - - - - - - - - - - ctgacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcaac